HL_5NDJ_188

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5NDJ|1|1H|G|2265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDJ_188 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0643

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|1H|C|2263
5NDJ|1|1H|U|2264
5NDJ|1|1H|G|2265
5NDJ|1|1H|G|2266
5NDJ|1|1H|G|2267
5NDJ|1|1H|G|2268
5NDJ|1|1H|C|2269
5NDJ|1|1H|G|2270
5NDJ|1|1H|G|2271

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 88

50S ribosomal protein L16

Chain I8

50S ribosomal protein L27

Chain X1

Transfer RNA; tRNA