HL_5NDJ_213
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDJ_213 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.1566
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5NDJ|1|W1|A|31
5NDJ|1|W1|U|32
5NDJ|1|W1|U|33
5NDJ|1|W1|G|34
5NDJ|1|W1|A|35
5NDJ|1|W1|A|36
5NDJ|1|W1|A|37
5NDJ|1|W1|A|38
5NDJ|1|W1|U|39
Current chains
- Chain W1
- tRNA-Phe
Nearby chains
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3I
- 30S ribosomal protein S12
- Chain Y1
- mRNA
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