HL_5NDJ_228
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UUCCCAUUCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 5NDJ|1|16|U|43
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDJ_228 not in the Motif Atlas
- Homologous match to HL_9DFE_067
- Geometric discrepancy: 0.0571
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5NDJ|1|16|U|36
5NDJ|1|16|U|37
5NDJ|1|16|C|38
5NDJ|1|16|C|39
5NDJ|1|16|C|40
5NDJ|1|16|A|41
5NDJ|1|16|U|42
5NDJ|1|16|U|43
5NDJ|1|16|C|44
5NDJ|1|16|C|45
5NDJ|1|16|G|46
5NDJ|1|16|A|47
5NDJ|1|16|A|48
5NDJ|1|16|C|49
5NDJ|1|16|A|50
Current chains
- Chain 16
- 5S ribosomal RNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 41
- 50S ribosomal protein L5
- Chain A8
- 50S ribosomal protein L18
- Chain M8
- 50S ribosomal protein L31
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