3D structure

PDB id
5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GGGGAAACUC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5NDJ|1|1G|G|796
5NDJ|1|1G|G|797
5NDJ|1|1G|G|798
5NDJ|1|1G|G|799
5NDJ|1|1G|A|800
5NDJ|1|1G|A|801
5NDJ|1|1G|A|802
5NDJ|1|1G|C|803
5NDJ|1|1G|U|804
5NDJ|1|1G|C|805

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain BA
30S ribosomal protein S20

Coloring options:

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