HL_5NDV_012

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGCCUCGGUAA

Length

12 nucleotides

Bulged bases

5NDV|1|1|U|545, 5NDV|1|1|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDV_012 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.5761

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|1|U|540
5NDV|1|1|U|541
5NDV|1|1|G|542
5NDV|1|1|C|543
5NDV|1|1|C|544
5NDV|1|1|U|545
5NDV|1|1|C|546
5NDV|1|1|G|547
5NDV|1|1|G|548
5NDV|1|1|U|549
5NDV|1|1|A|550
5NDV|1|1|A|551

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L9

60S ribosomal protein L9-A