HL_5NDV_112

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

5NDV|1|4|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDV_112 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.1886

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5NDV|1|4|G|124
5NDV|1|4|U|125
5NDV|1|4|A|126
5NDV|1|4|U|127
5NDV|1|4|U|128
5NDV|1|4|C|129

Current chains

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA