HL_5NDV_164

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

5NDV|1|5|U|2538, 5NDV|1|5|C|2539, 5NDV|1|5|A|2540, 5NDV|1|5|U|2541, 5NDV|1|5|U|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|5|A|2535
5NDV|1|5|A|2536
5NDV|1|5|U|2537
5NDV|1|5|U|2538
5NDV|1|5|C|2539
5NDV|1|5|A|2540
5NDV|1|5|U|2541
5NDV|1|5|U|2542
5NDV|1|5|U|2543
5NDV|1|5|U|2544

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain s1

40S ribosomal protein S1-A