HL_5NDV_225

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

5NDV|1|2|U|73, 5NDV|1|2|U|75, 5NDV|1|2|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDV_225 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2264

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5NDV|1|2|C|70
5NDV|1|2|A|71
5NDV|1|2|A|72
5NDV|1|2|U|73
5NDV|1|2|U|74
5NDV|1|2|U|75
5NDV|1|2|A|76
5NDV|1|2|U|77
5NDV|1|2|A|78
5NDV|1|2|C|79
5NDV|1|2|A|80
5NDV|1|2|G|81

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S6-A