HL_5NDV_232

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCGACCCUUUGGAAGA

Length

16 nucleotides

Bulged bases

5NDV|1|6|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|6|U|185
5NDV|1|6|C|186
5NDV|1|6|G|187
5NDV|1|6|A|188
5NDV|1|6|C|189
5NDV|1|6|C|190
5NDV|1|6|C|191
5NDV|1|6|U|192
5NDV|1|6|U|193
5NDV|1|6|U|194
5NDV|1|6|G|195
5NDV|1|6|G|196
5NDV|1|6|A|197
5NDV|1|6|A|198
5NDV|1|6|G|199
5NDV|1|6|A|200

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s8

40S ribosomal protein S8-A