HL_5NDV_233

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGUUCAAAGC

Length

11 nucleotides

Bulged bases

5NDV|1|6|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|6|G|763
5NDV|1|6|U|764
5NDV|1|6|G|765
5NDV|1|6|U|766
5NDV|1|6|U|767
5NDV|1|6|C|768
5NDV|1|6|A|769
5NDV|1|6|A|770
5NDV|1|6|A|771
5NDV|1|6|G|772
5NDV|1|6|C|773

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s4

40S ribosomal protein S4-A

Chain s9

40S ribosomal protein S9-A