HL_5NDV_234

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAUCAGAUACCG

Length

13 nucleotides

Bulged bases

5NDV|1|6|U|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|6|U|996
5NDV|1|6|G|997
5NDV|1|6|A|998
5NDV|1|6|U|999
5NDV|1|6|C|1000
5NDV|1|6|A|1001
5NDV|1|6|G|1002
5NDV|1|6|A|1003
5NDV|1|6|U|1004
5NDV|1|6|A|1005
5NDV|1|6|C|1006
5NDV|1|6|C|1007
5NDV|1|6|G|1008

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain c4

40S ribosomal protein S14-B

Chain d6

40S ribosomal protein S26-B