HL_5NDV_235

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUAGCAUUUGCUGGU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|6|G|1354
5NDV|1|6|C|1355
5NDV|1|6|U|1356
5NDV|1|6|A|1357
5NDV|1|6|G|1358
5NDV|1|6|C|1359
5NDV|1|6|A|1360
5NDV|1|6|U|1361
5NDV|1|6|U|1362
5NDV|1|6|U|1363
5NDV|1|6|G|1364
5NDV|1|6|C|1365
5NDV|1|6|U|1366
5NDV|1|6|G|1367
5NDV|1|6|G|1368
5NDV|1|6|U|1369

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain c9

40S ribosomal protein S19-A

Chain s5

40S ribosomal protein S5