HL_5NDW_028
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUGAUG
- Length
- 7 nucleotides
- Bulged bases
- 5NDW|1|1|U|1353, 5NDW|1|1|G|1354, 5NDW|1|1|U|1356
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDW_028 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.252
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_56334.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 16
Unit IDs
5NDW|1|1|U|1347
5NDW|1|1|U|1348
5NDW|1|1|U|1353
5NDW|1|1|G|1354
5NDW|1|1|A|1355
5NDW|1|1|U|1356
5NDW|1|1|G|1357
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L4
- 60S ribosomal protein L4-A
- Chain L6
- 60S ribosomal protein L6-A
- Chain M8
- 60S ribosomal protein L18-A
- Chain O2
- 60S ribosomal protein L32
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