HL_5NDW_050
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 5NDW|1|1|A|2372, 5NDW|1|1|A|2373, 5NDW|1|1|C|2374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDW_050 not in the Motif Atlas
- Homologous match to HL_8C3A_051
- Geometric discrepancy: 0.0792
- The information below is about HL_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.8
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5NDW|1|1|G|2369
5NDW|1|1|G|2370
5NDW|1|1|G|2371
5NDW|1|1|A|2372
5NDW|1|1|A|2373
5NDW|1|1|C|2374
5NDW|1|1|G|2375
5NDW|1|1|G|2376
5NDW|1|1|G|2377
5NDW|1|1|C|2378
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L3
- 60S ribosomal protein L3
- Chain M6
- 60S ribosomal protein L16-A
- Chain O2
- 60S ribosomal protein L32
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