HL_5NDW_052

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAAUUCAUUUUC

Length

12 nucleotides

Bulged bases

5NDW|1|1|C|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|1|G|2534
5NDW|1|1|A|2535
5NDW|1|1|A|2536
5NDW|1|1|U|2537
5NDW|1|1|U|2538
5NDW|1|1|C|2539
5NDW|1|1|A|2540
5NDW|1|1|U|2541
5NDW|1|1|U|2542
5NDW|1|1|U|2543
5NDW|1|1|U|2544
5NDW|1|1|C|2545

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L8

60S ribosomal protein L8-A

Chain O4

60S ribosomal protein L34-A

Chain S1

40S ribosomal protein S1-A