HL_5NDW_084

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGCCCAUUCGGGUC

Length

14 nucleotides

Bulged bases

5NDW|1|2|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|2|G|487
5NDW|1|2|G|488
5NDW|1|2|C|489
5NDW|1|2|C|490
5NDW|1|2|C|491
5NDW|1|2|A|492
5NDW|1|2|U|493
5NDW|1|2|U|494
5NDW|1|2|C|495
5NDW|1|2|G|496
5NDW|1|2|G|497
5NDW|1|2|G|498
5NDW|1|2|U|499
5NDW|1|2|C|500

Current chains

Chain 2

18S ribosomal RNA

Nearby chains