HL_5NDW_087

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

5NDW|1|2|U|718, 5NDW|1|2|U|719, 5NDW|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|2|G|703
5NDW|1|2|C|704
5NDW|1|2|U|705
5NDW|1|2|A|706
5NDW|1|2|A|707
5NDW|1|2|C|708
5NDW|1|2|C|709
5NDW|1|2|U|710
5NDW|1|2|U|711
5NDW|1|2|G|712
5NDW|1|2|A|713
5NDW|1|2|G|714
5NDW|1|2|U|715
5NDW|1|2|C|716
5NDW|1|2|C|717
5NDW|1|2|U|718
5NDW|1|2|U|719
5NDW|1|2|G|720
5NDW|1|2|U|721
5NDW|1|2|G|722
5NDW|1|2|G|723
5NDW|1|2|C|724
5NDW|1|2|U|725
5NDW|1|2|C|726
5NDW|1|2|U|727
5NDW|1|2|U|728
5NDW|1|2|G|729
5NDW|1|2|G|730
5NDW|1|2|C|731
5NDW|1|2|G|732
5NDW|1|2|A|733
5NDW|1|2|A|734
5NDW|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A