HL_5NDW_094

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

5NDW|1|2|U|1057, 5NDW|1|2|U|1060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDW_094 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3051

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5NDW|1|2|U|1055
5NDW|1|2|U|1056
5NDW|1|2|U|1057
5NDW|1|2|U|1058
5NDW|1|2|U|1059
5NDW|1|2|U|1060
5NDW|1|2|A|1061
5NDW|1|2|A|1062
5NDW|1|2|U|1063
5NDW|1|2|G|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D7

40S ribosomal protein S27-A

Chain S1

40S ribosomal protein S1-A