HL_5NDW_146

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGUAUGCAG

Length

10 nucleotides

Bulged bases

5NDW|1|5|G|1565, 5NDW|1|5|U|1570

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|5|C|1563
5NDW|1|5|U|1564
5NDW|1|5|G|1565
5NDW|1|5|U|1570
5NDW|1|5|A|1571
5NDW|1|5|U|1572
5NDW|1|5|G|1573
5NDW|1|5|C|1574
5NDW|1|5|A|1575
5NDW|1|5|G|1576

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain n5

60S ribosomal protein L25