HL_5NDW_147
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GUUAAGAUUC
- Length
- 10 nucleotides
- Bulged bases
- 5NDW|1|5|U|1606, 5NDW|1|5|U|1607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDW_147 not in the Motif Atlas
- Homologous match to HL_5TBW_035
- Geometric discrepancy: 0.1055
- The information below is about HL_5TBW_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5NDW|1|5|G|1599
5NDW|1|5|U|1600
5NDW|1|5|U|1601
5NDW|1|5|A|1602
5NDW|1|5|A|1603
5NDW|1|5|G|1604
5NDW|1|5|A|1605
5NDW|1|5|U|1606
5NDW|1|5|U|1607
5NDW|1|5|C|1608
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m9
- 60S ribosomal protein L19-A
- Chain n5
- 60S ribosomal protein L25
- Chain o4
- 60S ribosomal protein L34-A
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