HL_5NDW_189

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UCUUCGGA

Length

8 nucleotides

Bulged bases

5NDW|1|6|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|6|U|229
5NDW|1|6|C|230
5NDW|1|6|U|231
5NDW|1|6|U|232
5NDW|1|6|C|233
5NDW|1|6|G|234
5NDW|1|6|G|235
5NDW|1|6|A|236

Current chains

Chain 6

18S ribosomal RNA

Nearby chains