HL_5NDW_228

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGGGUCGAAAUGACCUU

Length

17 nucleotides

Bulged bases

5NDW|1|1|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|1|G|1018
5NDW|1|1|G|1019
5NDW|1|1|G|1020
5NDW|1|1|G|1021
5NDW|1|1|U|1022
5NDW|1|1|C|1023
5NDW|1|1|G|1024
5NDW|1|1|A|1025
5NDW|1|1|A|1026
5NDW|1|1|A|1027
5NDW|1|1|U|1028
5NDW|1|1|G|1029
5NDW|1|1|A|1030
5NDW|1|1|C|1031
5NDW|1|1|C|1032
5NDW|1|1|U|1033
5NDW|1|1|U|1034

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C5

40S ribosomal protein S15

Chain M1

60S ribosomal protein L11-B

Chain SM

Suppressor protein STM1