HL_5NDW_233

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUACAGGGCCCAUUCGGGUCUUGUAAU

Length

27 nucleotides

Bulged bases

5NDW|1|6|C|489, 5NDW|1|6|A|492, 5NDW|1|6|U|493, 5NDW|1|6|U|494, 5NDW|1|6|C|495, 5NDW|1|6|G|497, 5NDW|1|6|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|6|A|481
5NDW|1|6|U|482
5NDW|1|6|A|483
5NDW|1|6|C|484
5NDW|1|6|A|485
5NDW|1|6|G|486
5NDW|1|6|G|487
5NDW|1|6|G|488
5NDW|1|6|C|489
5NDW|1|6|C|490
5NDW|1|6|C|491
5NDW|1|6|A|492
5NDW|1|6|U|493
5NDW|1|6|U|494
5NDW|1|6|C|495
5NDW|1|6|G|496
5NDW|1|6|G|497
5NDW|1|6|G|498
5NDW|1|6|U|499
5NDW|1|6|C|500
5NDW|1|6|U|501
5NDW|1|6|U|502
5NDW|1|6|G|503
5NDW|1|6|U|504
5NDW|1|6|A|505
5NDW|1|6|A|506
5NDW|1|6|U|507

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A