HL_5NEP_002
3D structure
- PDB id
- 5NEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with methylguanidine
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.6 Å
Loop
- Sequence
- GACGAC
- Length
- 6 nucleotides
- Bulged bases
- 5NEP|1|A|A|11||||2_565
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86880.2
- Basepair signature
- cWW-R-R
- Number of instances in this motif group
- 16
Unit IDs
5NEP|1|A|G|7||||2_565
5NEP|1|A|A|8||||2_565
5NEP|1|A|C|9||||2_565
5NEP|1|A|G|10||||2_565
5NEP|1|A|A|11||||2_565
5NEP|1|A|C|12||||2_565
Current chains
- Chain A
- RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3')
Nearby chains
No other chains within 10ÅColoring options: