HL_5NG8_004

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_004 not in the Motif Atlas

Geometric match to HL_5J7L_154

Geometric discrepancy: 0.1967

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5NG8|1|AA|A|136
5NG8|1|AA|G|137
5NG8|1|AA|U|138
5NG8|1|AA|U|139
5NG8|1|AA|A|140
5NG8|1|AA|U|141
5NG8|1|AA|G|142
5NG8|1|AA|U|143

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AR

50S ribosomal protein L23