HL_5NG8_036

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

5NG8|1|AA|C|1536, 5NG8|1|AA|U|1540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_036 not in the Motif Atlas

Geometric match to HL_5J7L_170

Geometric discrepancy: 0.1095

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5NG8|1|AA|G|1535
5NG8|1|AA|C|1536
5NG8|1|AA|A|1537
5NG8|1|AA|A|1538
5NG8|1|AA|A|1539
5NG8|1|AA|U|1540
5NG8|1|AA|C|1541

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2