HL_5NG8_038

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5NG8|1|AA|A|1658, 5NG8|1|AA|A|1660, 5NG8|1|AA|A|1662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_038 not in the Motif Atlas

Geometric match to HL_7RQB_040

Geometric discrepancy: 0.1186

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5NG8|1|AA|C|1656
5NG8|1|AA|G|1657
5NG8|1|AA|A|1658
5NG8|1|AA|C|1659
5NG8|1|AA|A|1660
5NG8|1|AA|C|1661
5NG8|1|AA|A|1662
5NG8|1|AA|G|1663

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AQ

50S ribosomal protein L22