HL_5NG8_053

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGUUGAAAUC

Length

10 nucleotides

Bulged bases

5NG8|1|AA|U|2332

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_053 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1961

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5NG8|1|AA|G|2330
5NG8|1|AA|G|2331
5NG8|1|AA|U|2332
5NG8|1|AA|U|2333
5NG8|1|AA|G|2334
5NG8|1|AA|A|2336
5NG8|1|AA|A|2337
5NG8|1|AA|A|2338
5NG8|1|AA|U|2339
5NG8|1|AA|C|2340

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L5