HL_5NG8_066

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

5NG8|1|AA|A|2840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_066 not in the Motif Atlas

Geometric match to HL_4WF9_064

Geometric discrepancy: 0.1066

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5NG8|1|AA|A|2839
5NG8|1|AA|A|2840
5NG8|1|AA|A|2841
5NG8|1|AA|G|2842
5NG8|1|AA|A|2843
5NG8|1|AA|U|2844
5NG8|1|AA|G|2845
5NG8|1|AA|A|2846
5NG8|1|AA|U|2847

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AL

50S ribosomal protein L17