HL_5NG8_070

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUUGAUCCUGG

Length

11 nucleotides

Bulged bases

5NG8|1|Aa|U|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_070 not in the Motif Atlas

Geometric match to HL_4LFB_001

Geometric discrepancy: 0.0907

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5NG8|1|Aa|U|13
5NG8|1|Aa|U|14
5NG8|1|Aa|U|15
5NG8|1|Aa|G|16
5NG8|1|Aa|A|17
5NG8|1|Aa|U|18
5NG8|1|Aa|C|19
5NG8|1|Aa|C|20
5NG8|1|Aa|U|21
5NG8|1|Aa|G|22
5NG8|1|Aa|G|23

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ae

30S ribosomal protein S5

Chain Al

30S ribosomal protein S12