HL_5NG8_083

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_083 not in the Motif Atlas

Geometric match to HL_4LFB_014

Geometric discrepancy: 0.1922

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5NG8|1|Aa|G|625
5NG8|1|Aa|C|626
5NG8|1|Aa|U|627
5NG8|1|Aa|C|628
5NG8|1|Aa|A|629
5NG8|1|Aa|A|630
5NG8|1|Aa|C|631

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

30S ribosomal protein S4

Chain Ap

30S ribosomal protein S16