HL_5NG8_085

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_085 not in the Motif Atlas

Geometric match to HL_4LFB_016

Geometric discrepancy: 0.0786

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5NG8|1|Aa|C|734
5NG8|1|Aa|G|735
5NG8|1|Aa|A|736
5NG8|1|Aa|A|737
5NG8|1|Aa|G|738
5NG8|1|Aa|G|739

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ao

30S ribosomal protein S15

Chain Ar

30S ribosomal protein S18

Chain Au

30S ribosomal protein S21