HL_5NG8_107

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5NG8|1|BA|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_107 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.1143

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5NG8|1|BA|G|197
5NG8|1|BA|A|198
5NG8|1|BA|A|199
5NG8|1|BA|A|200
5NG8|1|BA|C|201
5NG8|1|BA|A|202
5NG8|1|BA|U|203
5NG8|1|BA|C|204

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L15

Chain BV

50S ribosomal protein L28