HL_5NG8_118

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

5NG8|1|BA|U|590, 5NG8|1|BA|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_118 not in the Motif Atlas

Geometric match to HL_4WF9_017

Geometric discrepancy: 0.1208

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

5NG8|1|BA|C|587
5NG8|1|BA|G|588
5NG8|1|BA|U|589
5NG8|1|BA|U|590
5NG8|1|BA|A|591
5NG8|1|BA|A|592
5NG8|1|BA|U|593
5NG8|1|BA|G|594

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L13

Chain BO

50S ribosomal protein L20

Chain BP

50S ribosomal protein L21