HL_5NG8_149
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 5NG8|1|BA|A|2057, 5NG8|1|BA|A|2058, 5NG8|1|BA|G|2059
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NG8_149 not in the Motif Atlas
- Geometric match to HL_4WF9_047
- Geometric discrepancy: 0.1185
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5NG8|1|BA|G|2054
5NG8|1|BA|U|2055
5NG8|1|BA|G|2056
5NG8|1|BA|A|2057
5NG8|1|BA|A|2058
5NG8|1|BA|G|2059
5NG8|1|BA|A|2060
5NG8|1|BA|U|2061
5NG8|1|BA|G|2062
5NG8|1|BA|C|2063
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BD
- 50S ribosomal protein L3
- Chain BO
- 50S ribosomal protein L20
- Chain BP
- 50S ribosomal protein L21
- Chain BZ
- 50S ribosomal protein L32
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