HL_5NG8_153

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5NG8|1|BA|A|2295, 5NG8|1|BA|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_153 not in the Motif Atlas

Geometric match to HL_4WF9_050

Geometric discrepancy: 0.0811

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

5NG8|1|BA|C|2291
5NG8|1|BA|U|2292
5NG8|1|BA|A|2293
5NG8|1|BA|A|2294
5NG8|1|BA|A|2295
5NG8|1|BA|A|2296
5NG8|1|BA|G|2297
5NG8|1|BA|G|2298
5NG8|1|BA|U|2299
5NG8|1|BA|A|2300
5NG8|1|BA|A|2301
5NG8|1|BA|C|2302
5NG8|1|BA|G|2303

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BK

50S ribosomal protein L16

Chain BU

50S ribosomal protein L27