HL_5NG8_179

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5NG8|1|Ba|A|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_179 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2126

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5NG8|1|Ba|C|350
5NG8|1|Ba|U|351
5NG8|1|Ba|A|352
5NG8|1|Ba|C|353
5NG8|1|Ba|G|354
5NG8|1|Ba|G|355

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L14

Chain BN

50S ribosomal protein L19