HL_5NG8_188

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUUUCCGC

Length

8 nucleotides

Bulged bases

5NG8|1|Ba|C|852, 5NG8|1|Ba|C|853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_188 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3594

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5NG8|1|Ba|G|848
5NG8|1|Ba|U|849
5NG8|1|Ba|U|850
5NG8|1|Ba|U|851
5NG8|1|Ba|C|852
5NG8|1|Ba|C|853
5NG8|1|Ba|G|854
5NG8|1|Ba|C|855

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain Ab

30S ribosomal protein S2

Chain Av

Ribosome hibernation promotion factor

Chain Br

30S ribosomal protein S18