HL_5NG8_199

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_199 not in the Motif Atlas

Geometric match to HL_4LFB_029

Geometric discrepancy: 0.134

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5NG8|1|Ba|C|1324
5NG8|1|Ba|U|1325
5NG8|1|Ba|G|1326
5NG8|1|Ba|C|1327
5NG8|1|Ba|A|1328
5NG8|1|Ba|A|1329
5NG8|1|Ba|C|1330
5NG8|1|Ba|U|1331
5NG8|1|Ba|C|1332
5NG8|1|Ba|G|1333

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bm

30S ribosomal protein S13

Chain Bn

30S ribosomal protein S14 type Z

Chain Bs

30S ribosomal protein S19