HL_5NG8_212
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- UUACUAACGA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NG8_212 not in the Motif Atlas
- Geometric match to HL_4WF9_067
- Geometric discrepancy: 0.2157
- The information below is about HL_4WF9_067
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
5NG8|1|BA|U|59
5NG8|1|BA|U|60
5NG8|1|BA|A|61
5NG8|1|BA|C|62
5NG8|1|BA|U|63
5NG8|1|BA|A|64
5NG8|1|BA|A|65
5NG8|1|BA|C|66
5NG8|1|BA|G|67
5NG8|1|BA|A|68
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L34
- Chain BR
- 50S ribosomal protein L23
- Chain BW
- 50S ribosomal protein L29
Coloring options: