HL_5NG8_218
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- UUCCCAUGCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 5NG8|1|BB|G|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NG8_218 not in the Motif Atlas
- Geometric match to HL_5NS3_003
- Geometric discrepancy: 0.1336
- The information below is about HL_5NS3_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.3
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5NG8|1|BB|U|32
5NG8|1|BB|U|33
5NG8|1|BB|C|34
5NG8|1|BB|C|35
5NG8|1|BB|C|36
5NG8|1|BB|A|37
5NG8|1|BB|U|38
5NG8|1|BB|G|39
5NG8|1|BB|C|40
5NG8|1|BB|C|41
5NG8|1|BB|G|42
5NG8|1|BB|A|43
5NG8|1|BB|A|44
5NG8|1|BB|C|45
5NG8|1|BB|A|46
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- 50S ribosomal protein L5
- Chain BM
- 50S ribosomal protein L18
- Chain BY
- 50S ribosomal protein L31 type B
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