3D structure

PDB id
5NO2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.16 Å

Loop

Sequence
GCAGCC(G7M)C
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5NO2_013 not in the Motif Atlas
Homologous match to HL_4LFB_013
Geometric discrepancy: 0.1589
The information below is about HL_4LFB_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5NO2|1|A|G|521
5NO2|1|A|C|522
5NO2|1|A|A|523
5NO2|1|A|G|524
5NO2|1|A|C|525
5NO2|1|A|C|526
5NO2|1|A|G7M|527
5NO2|1|A|C|528

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain Z
Small ribosomal subunit biogenesis GTPase RsgA

Coloring options:


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