HL_5NO2_026

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

5NO2|1|A|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NO2_026 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.2205

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5NO2|1|A|U|1165
5NO2|1|A|G|1166
5NO2|1|A|A|1167
5NO2|1|A|U|1168
5NO2|1|A|A|1169
5NO2|1|A|A|1170
5NO2|1|A|A|1171

Current chains

Chain A

16S ribosomal RNA

Nearby chains