HL_5NO2_034

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

5NO2|1|A|U|842, 5NO2|1|A|G|844, 5NO2|1|A|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NO2_034 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2013

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

5NO2|1|A|C|839
5NO2|1|A|C|840
5NO2|1|A|C|841
5NO2|1|A|U|842
5NO2|1|A|U|843
5NO2|1|A|G|844
5NO2|1|A|A|845
5NO2|1|A|G|846
5NO2|1|A|G|847

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S18