HL_5NWY_009

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5NWY|1|0|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1259

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5NWY|1|0|C|342
5NWY|1|0|U|343
5NWY|1|0|A|344
5NWY|1|0|C|345
5NWY|1|0|G|346
5NWY|1|0|G|347

Current chains

Chain 0

16S rRNA

Nearby chains

Chain X

50S ribosomal protein L14

Chain c

50S ribosomal protein L19