HL_5NWY_012

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5NWY|1|0|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1255

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5NWY|1|0|G|462
5NWY|1|0|U|463
5NWY|1|0|U|464
5NWY|1|0|A|465
5NWY|1|0|A|466
5NWY|1|0|U|467
5NWY|1|0|A|468
5NWY|1|0|C|469
5NWY|1|0|C|470

Current chains

Chain 0

16S rRNA

Nearby chains