HL_5NWY_033
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAGCGGUAAG
- Length
- 11 nucleotides
- Bulged bases
- 5NWY|1|M|C|16, 5NWY|1|M|G|17, 5NWY|1|M|G|18, 5NWY|1|M|U|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NWY_033 not in the Motif Atlas
- Homologous match to HL_1SER_001
- Geometric discrepancy: 0.4495
- The information below is about HL_1SER_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40252.3
- Basepair signature
- cWW-tSH-cWS-F
- Number of instances in this motif group
- 5
Unit IDs
5NWY|1|M|C|12
5NWY|1|M|A|13
5NWY|1|M|A|14
5NWY|1|M|G|15
5NWY|1|M|C|16
5NWY|1|M|G|17
5NWY|1|M|G|18
5NWY|1|M|U|19
5NWY|1|M|A|20
5NWY|1|M|A|21
5NWY|1|M|G|22
Current chains
- Chain M
- Gln-tRNA
Nearby chains
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- 50S ribosomal protein L5
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