HL_5NWY_035
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NWY_035 not in the Motif Atlas
- Homologous match to HL_4WJ4_003
- Geometric discrepancy: 0.0927
- The information below is about HL_4WJ4_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5NWY|1|M|G|52
5NWY|1|M|U|53
5NWY|1|M|U|54
5NWY|1|M|C|55
5NWY|1|M|G|56
5NWY|1|M|A|57
5NWY|1|M|A|58
5NWY|1|M|U|59
5NWY|1|M|C|60
Current chains
- Chain M
- Gln-tRNA
Nearby chains
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- 50S ribosomal protein L5
- Chain Z
- 50S ribosomal protein L16
Coloring options: