HL_5NWY_048

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5NWY|1|N|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_048 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0793

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5NWY|1|N|G|410
5NWY|1|N|G|411
5NWY|1|N|A|412
5NWY|1|N|C|413
5NWY|1|N|C|414
5NWY|1|N|A|415
5NWY|1|N|U|416
5NWY|1|N|C|417

Current chains

Chain N

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L15