HL_5NWY_055

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

5NWY|1|N|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NWY_055 not in the Motif Atlas

Homologous match to HL_5J7L_153

Geometric discrepancy: 0.1459

The information below is about HL_5J7L_153

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13529.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5NWY|1|N|U|641
5NWY|1|N|U|642
5NWY|1|N|A|643
5NWY|1|N|A|644
5NWY|1|N|C|645
5NWY|1|N|U|646
5NWY|1|N|G|647

Current chains

Chain N

23S rRNA

Nearby chains

Chain o

50S ribosomal protein L33

Chain q

50S ribosomal protein L35